Publications HAL des membres

Carito Guziolowski

    • [2] Computational Discovery of Dynamic Cell Line Specific Boolean Networks from Multiplex Time-Course Data
      Misbah Razzaq, Loïc Paulevé, Anne Siegel, Julio Saez-Rodriguez, Jérémie Bourdon, Carito Guziolowski.
      https://hal.archives-ouvertes.fr/hal-01897020
    • [3] Constraints on signaling network logic reveal functional subgraphs on Multiple Myeloma OMIC data
      Bertrand Miannay, Stéphane Minvielle, Florence Magrangeas, Carito Guziolowski.
      http://www.hal.inserm.fr/inserm-01804825

      2017

    • [5] Logic programming reveals alteration of key transcription factors in multiple myeloma
      Bertrand Miannay, Stéphane Minvielle, Olivier Roux, Pierre Drouin, Hervé Avet-Loiseau, Catherine Guérin-Charbonnel, Wilfried Gouraud, Michel Attal, Thierry Facon, Nikhil Munshi, Philippe Moreau, Loïc Campion, Florence Magrangeas, Carito Guziolowski.
      http://www.hal.inserm.fr/inserm-01611119
    • [8] caspo: a toolbox for automated reasoning on the response of logical signaling networks families
      Santiago Videla, Julio Saez-Rodriguez, Carito Guziolowski, Anne Siegel.
      https://hal.inria.fr/hal-01426880
    • [10] Deciphering transcriptional regulations coordinating the response to environmental changes
      Vicente Acuña, Andrés Aravena, Carito Guziolowski, Damien Eveillard, Anne Siegel, Alejandro Maass.
      https://hal.archives-ouvertes.fr/hal-01260866
    • [11] Boolean Network Identification from Perturbation Time Series Data combining Dynamics Abstraction and Logic Programming
      Max Ostrowski, Loïc Paulevé, Torsten Schaub, Anne Siegel, Carito Guziolowski.
      https://hal.archives-ouvertes.fr/hal-01354075

      2015

    • [12] Learning Boolean logic models of signaling networks with ASP
      Santiago Videla, Carito Guziolowski, Federica Eduati, Sven Thiele, Martin Gebser, Jacques Nicolas, Julio Saez-Rodriguez, Torsten Schaub, Anne Siegel.
      https://hal.inria.fr/hal-01058610
    • [15] Designing experiments to discriminate families of logic models
      Santiago Videla, Irina Konokotina, Leonidas Alexopoulos, Julio Saez-Rodriguez, Torsten Schaub, Anne Siegel, Carito Guziolowski.
      https://hal.inria.fr/hal-01196178
    • [16] Extended notions of sign consistency to relate experimental data to signaling and regulatory network topologies
      Sven Thiele, Julio Saez-Rodriguez, Luca Cerone, A Siegel, Carito Guziolowski, Steffen Klamt.
      https://hal.inria.fr/hal-01225228

      2014

    • [17] Improving robustness in the study of logical model of signalling networks with answer set programming
      Anne Siegel, Carito Guziolowski, Santiago Videla, Torsten Schaub.
      https://hal.inria.fr/hal-01095607

      2013

    • [18] Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming
      Carito Guziolowski, Santiago Videla, Federica Eduati, Sven Thiele, Thomas Cokelaer, Anne Siegel, Julio Saez-Rodriguez.
      https://hal.inria.fr/hal-00853704

      2012

    • [19] Revisiting the Training of Logic Models of Protein Signaling Networks with a Formal Approach based on Answer Set Programming
      Santiago Videla, Carito Guziolowski, Federica Eduati, Sven Thiele, Niels Grabe, Julio Saez-Rodriguez, Anne Siegel.
      https://hal.inria.fr/hal-00737112v2

      2011

    • [22] A new method for modeling reactions and regulations to analyze high-throughout data
      Pierre Blavy, Florence Gondret, Thiele Sven, Carito Guziolowski, Sandrine Lagarrigue, Jaap Van Milgen, Anne Siegel.
      https://hal.inria.fr/hal-00640720
    • [23] Designing Logical Rules to Model the Response of Biomolecular Networks with Complex Interactions: An Application to Cancer Modeling.
      Carito Guziolowski, Sylvain Blachon, Tatiana Baumuratova, Gautier Stoll, Ovidiu Radulescu, Anne Siegel.
      https://hal.inria.fr/inria-00538134
    • [25] Repair and Prediction (under Inconsistency) in Large Biological Networks with Answer Set Programming
      Martin Gebser, Carito Guziolowski, Mihail Ivanchev, Torsten Schaub, Anne Siegel, Philippe Veber, Sven Thiele.
      https://hal.inria.fr/inria-00538137

      2009

    • [26] Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks
      Sylvain Blachon, Gautier Stoll, Carito Guziolowski, Andrei Zinovyev, Emmanuel Barillot, Anne Siegel, Ovidiu Radulescu.
      https://hal.inria.fr/inria-00429801
    • [27] BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks
      Carito Guziolowski, Annabel Bourdé, Francois Moreews, Anne Siegel.
      https://hal.inria.fr/inria-00429804

      2008

    • [28] CURATING A LARGE-SCALE REGULATORY NETWORK BY EVALUATING ITS CONSISTENCY WITH EXPRESSION DATASETS
      Carito Guziolowski, Jérémy Gruel, Ovidiu Radulescu, Anne Siegel.
      https://hal.inria.fr/inria-00331385
    • [29] Inferring the role of transcription factors in regulatory networks
      Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel.
      https://hal.inria.fr/inria-00330578

      2007

    • [30] Qualitative response of interaction networks: application to the validation of biological models
      Anne Siegel, Carito Guziolowski, Philippe Veber, Ovidiu Radulescu, Michel Le Borgne.
      https://hal.inria.fr/inria-00178854
    • [31] Inferring the role of transcription factors in regulatory networks
      Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel.
      https://hal.inria.fr/inria-00185038
    • [32] Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study
      Carito Guziolowski, Philippe Veber, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel.
      https://hal.inria.fr/inria-00145537v2
    • [33] Optimiser un plan d'expérience à partir de modèles qualitatifs?
      Anne Siegel, Carito Guziolowski, Philippe Veber, Ovidiu Radulescu, Michel Le Borgne.
      https://hal.inria.fr/inria-00178791
    • [35] Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study
      Carito Guziolowski, Philippe Veber, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel.
      https://hal.inria.fr/inria-00178914

      2006

    • [36] JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow
      Mariano Latorre, Herman Silva, Juan Saba, Carito Guziolowski, Paula Vizoso, Veronica Martinez, Jonathan Maldonado, Andrea Morales, Rodrigo Caroca, Veronica Cambiazo, Reinaldo Campos-Vargas, Mauricio Gonzalez, Ariel Orellana, Julio Retamales, Lee A Meisel.
      https://hal.inria.fr/inria-00180207
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Groupement de Recherche en Intégration de données Omics à Très grande Echelle