Publications HAL des membres

Géraldine Jean

      2018

    • [1] Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience
      Dinka Mandakovic, Claudia Rojas, Jonathan Maldonado, Mauricio Latorre, Dante Travisany, Erwan Delage, Audrey Bihouee, Géraldine Jean, Francisca Diaz, Beatriz Fernández-Gómez, Pablo Cabrera, Alexis Gaete, Claudio Latorre, Rodrigo Gutierrez, Alejandro Maass, Veronica Cambiazo, Sergio Navarrete, Damien Eveillard, Mauricio Gonzalez.
      https://hal.archives-ouvertes.fr/hal-01774624

      2014

    • [8] DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation.
      Manu J Dubin, Pei Zhang, Dazhe Meng, Marie-Stanislas Remigereau, Edward J Osborne, Francesco Paolo Casale, Philipp Drewe, André Kahles, Géraldine Jean, Bjarni Vilhjálmsson, Joanna Jagoda, Selen Irez, Viktor Voronin, Qiang Song, Quan Long, Gunnar Rätsch, Oliver Stegle, Richard M Clark, Magnus Nordborg.
      https://hal.archives-ouvertes.fr/hal-01162697
    • [10] Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis.
      Vipin T Sreedharan, Sebastian J Schultheiss, Géraldine Jean, André Kahles, Regina Bohnert, Philipp Drewe, Pramod Mudrakarta, Nico Görnitz, Georg Zeller, Gunnar Rätsch.
      https://hal.archives-ouvertes.fr/hal-00965351

      2013

    • [11] Systematic evaluation of spliced alignment programs for RNA-seq data.
      Non Renseigné, Tyler Alioto, Jonas Behr, Regina Bohnert, Davide Campagna, Carrie A Davis, Alexander Dobin, Pär G Engström, Thomas R Gingeras, Gregory R Grant, Géraldine Jean, André Kahles, Peter Kosarev, Sheng Li, Jinze Liu, Christopher E Mason, Vladimir Molodtsov, Zemin Ning, Hannes Ponstingl, Jan F Prins, Paolo Ribeca, Igor Seledtsov, Botond Sipos, Victor Solovyev, Tamara Steijger, Giorgio Valle, Nicola Vitulo, Kai Wang, Thomas D Wu, Georg Zeller, Gunnar Rätsch, Nick Goldman, Tim J Hubbard, Jennifer Harrow, Roderic Guigó, Paul Bertone.
      https://hal.archives-ouvertes.fr/hal-00909047
    • [12] Assessment of transcript reconstruction methods for RNA-seq.
      Tamara Steijger, Josep F Abril, Pär G Engström, Felix Kokocinski, Martin Akerman, Tyler Alioto, Giovanna Ambrosini, Stylianos E Antonarakis, Jonas Behr, Paul Bertone, Regina Bohnert, Philipp Bucher, Nicole Cloonan, Thomas Derrien, Sarah Djebali, Jiang Du, Sandrine Dudoit, Mark Gerstein, Thomas R Gingeras, David Gonzalez, Sean M Grimmond, Roderic Guigó, Lukas Habegger, Jennifer Harrow, Tim J Hubbard, Christian Iseli, Géraldine Jean, André Kahles, Julien Lagarde, Jing Leng, Gregory Lefebvre, Suzanna Lewis, Ali Mortazavi, Peter Niermann, Gunnar Rätsch, Alexandre Reymond, Paolo Ribeca, Hugues Richard, Jacques Rougemont, Joel Rozowsky, Michael Sammeth, Andrea Sboner, Marcel H Schulz, Steven M J Searle, Naryttza Diaz Solorzano, Victor Solovyev, Mario Stanke, Brian J Stevenson, Heinz Stockinger, Armand Valsesia, David Weese, Simon White, Barbara J Wold, Jie Wu, Thomas D Wu, Georg Zeller, Daniel Zerbino, Michael Q Zhang.
      https://hal.archives-ouvertes.fr/hal-00909081

      2011

    • [14] Multiple reference genomes and transcriptomes for Arabidopsis thaliana.
      Xiangchao Gan, Oliver Stegle, Jonas Behr, Joshua G Steffen, Philipp Drewe, Katie L Hildebrand, Rune Lyngsoe, Sebastian J Schultheiss, Edward J Osborne, Vipin T Sreedharan, André Kahles, Regina Bohnert, Géraldine Jean, Paul Derwent, Paul Kersey, Eric J Belfield, Nicholas P Harberd, Eric Kemen, Christopher Toomajian, Paula X Kover, Richard M Clark, Gunnar Rätsch, Richard Mott.
      https://hal.archives-ouvertes.fr/hal-00909088
    • [15] Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data
      Sebastian J Schultheiss, Géraldine Jean, Jonas Behr, Regina Bohnert, Philipp Drewe, Nico Görnitz, André Kahles, Pramod Mudrakarta, Vipin T Sreedharan, Georg Zeller, Gunnar Rätsch.
      https://hal.archives-ouvertes.fr/hal-00914308

      2007

    • [21] Reconstruction and visualization of genome rearrangements within the Kuyveromyces
      Géraldine Jean, David James Sherman, Macha Nikolski.
      https://hal.inria.fr/inria-00350567
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Groupement de Recherche en Intégration de données Omics à Très grande Echelle