Publications HAL des membres

Matthieu Barret


    • [1] Potential of the rpoB gene for metabarcoding of bacterial communities associated with entomopathogenic nematodes Steinernema
      Jean-Claude Ogier, Sylvie Pages, Matthieu Barret, Sophie Gaudriault.
    • [5] Microbial metacommunity: a METABAR coding approach
      Marc Buee, Matthieu Barret, Maria Bernard, Didier Debroas, Isabelle Domaizon, Laure Fauchery, Claude Husson, Valerie Laval, Géraldine Pascal, Charlie Pauvert, Christophe Mougel, Thomas Pommier, Dirk Redecker, Aymé Spor, Sébastien Terrat, Veronique Edel-Hermann, Corinne Vacher.
    • [6] Pathobiome entomopathogenic nematodes Development of methodology for a taxonomic assignation at the species level in the the pathobiome of entomopathogenic nematodes from the Steinernema genus
      Jean-Claude Ogier, Sophie Gaudriault, Pauline Heuillard, Olivier Zemb, Sebastien Carrere, Maxime Galan, Matthieu Barret.
    • [7] Plant communication with associated microbiota in the spermosphere, rhizosphere and phyllosphere
      Philippe Lemanceau, Matthieu Barret, Sylvie Mazurier, Samuel Mondy, Barbara Pivato, Thomas Fort, Corinne Vacher.
    • [8] Bacterial and fungal communities vary with the type of organic substrate: implications for biocontrol of soilless crops
      Virginie Montagne, Hervé Capiaux, Matthieu Barret, Patrice Cannavo, Sylvain Charpentier, Claire Grosbellet, Thierry Lebeau.


    • [9] Microbiome diversity in crop debris and the search for micro-organisms acting on Zymoseptoria tritici and Leptosphaeria maculans primary inoculum
      Lydie Kerdraon, Marie-Helene Balesdent, Matthieu Barret, Valerie Laval, Frederic Suffert.
    • [10] Characterization of relative abundance of lactic acid bacteria species in French organic sourdough by cultural, qPCR and MiSeq high-throughput sequencing methods
      Elisa Michel, Clarisse Monfort, Marion Deffrasnes, Stéphane Guezenec, Emilie Lhomme, Matthieu Barret, Delphine Sicard, Xavier Dousset, Bernard Onno.
    • [11] Terroir is a key driver of seed-associated microbial assemblages
      Stéphanie Klaedtke, Marie Agnes Jacques, Lorenzo Raggi, Anne Preveaux, Sophie Bonneau, Valeria Negri, Véronique Chable, Matthieu Barret.
    • [13] Pairwise transcriptomic analysis of the interactions between the ectomycorrhizal fungus laccaria bicolor S238N and three beneficial, neutral and antagonistic soil bacteria
      Aurélie Deveau, Matthieu Barret, Abdala Gamby Diedhiou, Johan Leveau, Wietse De Boer, Francis Martin, Alain Sarniguet, Pascale Frey-Klett.
    • [14] Emergence Shapes the Structure of the Seed Microbiota
      Matthieu Barret, Martial Briand, Sophie Bonneau, Anne Préveaux, Sophie Valière, Olivier Bouchez, Gilles Hunault, Philippe Simoneau, Marie-Agnès Jacques.


    • [15] Microbial communities associated to common bean seed - A mechanism of local adaptation of plants?
      Stéphanie Klaedtke, Matthieu Barret, Véronique Chable, Marie Agnes Jacques.


    • [17] Genomic analysis of the biocontrol strain Pseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots
      Muriel Marchi, Morgane Boutin, Kevin Gazengel, Claude Rispe, Jean-Pierre Gauthier, Anne-Yvonne Guillerm-Erckelboudt, Lionel Lebreton, Matthieu Barret, Stéphanie Daval, Alain Sarniguet.


    • [18] The plant pathogenic fungus Gaeumannomyces graminis var. tritici improves bacterial growth and triggers early gene regulations in the biocontrol strain Pseudomonas fluorescens Pf29Arp
      Matthieu Barret, P. Frey-Klett, M. Boutin, A.-Y. Guillerm-Erckelboudt, Frédérique Martin, Laëtitia Guillot, Alain Sarniguet.

Groupement de Recherche en Intégration de données Omics à Très grande Echelle