Publications HAL des membres

Alban Gaignard

      2020

    • [1] Characterization of 3D Bifurcations in Micro-scan and MRA-TOF Images of Cerebral Vasculature for Prediction of Intra-Cranial Aneurysms
      Anass Nouri, Florent Autrusseau, Romain Bourcier, Alban Gaignard, Vincent L'allinec, Céline Menguy, Joëlle Véziers, Hubert Desal, Gervaise Loirand, Richard Redon.
      https://hal.archives-ouvertes.fr/hal-02888926
    • [2] EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats (update 2020)
      Matúš Kalaš, Laure Plantard, Nataša Sladoje, Joakim Lindblad, Moritz Kirschmann, Martin Jones, Anatole Chessel, Leandro Scholz, Fabienne Rössler, Alexandre Dufour, John Bogovic, Chong Zhang, Dominic Waithe, Paula Sampaio, Lassi Paavolainen, David Hörl, Sebastien Munck, Ofra Golani, Josh Moore, Alban Gaignard, Florian Levet, Jon Ison, Kota Miura, Julien Colombelli, Perrine Paul-Gilloteaux.
      https://hal.archives-ouvertes.fr/hal-02910948
    • [3] EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats (update 2019)
      Matúš Kalaš, Laure Plantard, Nataša Sladoje, Joakim Lindblad, Moritz Kirschmann, Martin Jones, Anatole Chessel, Leandro Scholz, Fabienne Rössler, Alexandre Dufour, John Bogovic, Chong Zhang, Dominic Waithe, Paula Sampaio, Lassi Paavolainen, David Hörl, Sebastien Munck, Ofra Golani, Josh Moore, Alban Gaignard, Florian Levet, Jon Ison, Kota Miura, Julien Colombelli, Perrine Paul-Gilloteaux.
      https://hal.archives-ouvertes.fr/hal-02910949
    • [5] Prediction of Unruptured Intracranial Aneurysm Evolution: The UCAN Project
      Vincent l'Allinec, Stéphanie Chatel, Matilde Karakachoff, Emmanuelle Bourcereau, Zeineb Es-Salah-Lamoureux, Alban Gaignard, Florent Autrusseau, Solène Jouan, Anne-Clémence Vion, Gervaise Loirand, Hubert Desal, Olivier Naggara, Richard Redon, Myriam Edjlali-Goujon, Romain Bourcier.
      https://hal.archives-ouvertes.fr/hal-02889889

      2019

    • [8] INEX-MED: INtegration and EXploration of heterogeneous bio-MEDical data
      Alban Gaignard, Julie Thompson, Kirsley Chennen, Maxime Folschette, Jocelyn Laporte, Olivier Poch, Richard Redon, Hala Skaf-Molli.
      https://hal.archives-ouvertes.fr/hal-02330853
    • [9] INEX-MED: a Knowledge Graph to explore and link heterogeneous bio-medical data
      Maxime Folschette, Kirsley Chennen, Alban Gaignard, Richard Redon, Hala Skaf-Molli, Olivier Poch, Jocelyn Laporte, Julie Thompson.
      https://hal.archives-ouvertes.fr/hal-02330809
    • [10] On distributed collaboration for biomedical analyses
      Fatima-Zahra Boujdad, Alban Gaignard, Mario Südholt, Wilmer Garzón-Alfonso, Luis Daniel Benavides Navarro, Richard Redon.
      https://hal.archives-ouvertes.fr/hal-02080463
    • [11] 3D bifurcations characterization for intra-cranial aneurysms prediction
      Anass Nouri, Florent Autrusseau, Romain Bourcier, Alban Gaignard, Vincent l'Allinec, Céline Menguy, Joëlle Véziers, Hubert Desal, Gervaise Loirand, Richard Redon.
      https://hal.archives-ouvertes.fr/hal-01896717
    • [12] EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats
      Matúš Kalaš, Laure Plantard, Nataša Sladoje, Joakim Lindblad, Moritz Kirschmann, Martin Jones, Anatole Chessel, Leandro Scholz, Fabienne Rössler, Alexandre Dufour, John Bogovic, Chong Zhang, Dominic Waithe, Paula Sampaio, Lassi Paavolainen, David Hörl, Sebastien Munck, Ofra Golani, Josh Moore, Alban Gaignard, Florian Levet, Perrine Paul-Gilloteaux, Jon Ison, Kota Miura, Julien Colombelli.
      https://hal.archives-ouvertes.fr/hal-02267597

      2018

    • [13] Whole-exon sequencing of human myeloma cell lines shows mutations related to myeloma patients at relapse with major hits in the DNA regulation and repair pathways
      Benoit Tessoulin, Agnès Moreau-Aubry, Géraldine Descamps, Patricia Gomez-Bougie, Sophie Maiga, Alban Gaignard, David Chiron, Emmanuelle Ménoret, Steven Le Gouill, Philippe Moreau, Martine Amiot, Catherine Deceunynck.
      https://www.hal.inserm.fr/inserm-01958772

      2017

    • [15] Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities
      Sarah Cohen-Boulakia, Khalid Belhajjame, Olivier Collin, Jérôme Chopard, Christine Froidevaux, Alban Gaignard, Konrad Hinsen, Pierre Larmande, Yvan Le Bras, Frédéric Lemoine, Fabien Mareuil, Hervé Ménager, Christophe Pradal, Christophe Blanchet.
      https://hal.archives-ouvertes.fr/hal-01516082
    • [17] Developing and sharing reproducible bioinformatics pipelines: best practices
      Yohann Lelièvre, Audrey Bihouée, Eric Charpentier, Alban Gaignard, Simon Souchet, Damien Vintache.
      https://hal.archives-ouvertes.fr/hal-01768429
    • [20] Understanding the Pathophysiology of Intracranial Aneurysm: The ICAN Project
      Romain Bourcier, Stéphanie Chatel, Emmanuelle Bourcereau, Solène Jouan, Hervé Le Marec, Benjamin Daumas-Duport, Mathieu Sevin-Allouet, Benoit Guillon, Vincent Roualdes, Tanguy Riem, Bertrand Isidor, Pierre Lebranchu, Jérôme Connault, Thierry Le Tourneau, Alban Gaignard, Gervaise Loirand, Richard Redon, Hubert Desal.
      https://hal.archives-ouvertes.fr/hal-01768333

      2014

    • [23] OntoVIP: An ontology for the annotation of object models used for medical image simulation.
      Bernard Gibaud, Germain Forestier, Hugues Benoit-Cattin, Frédéric Cervenansky, Patrick Clarysse, Denis Friboulet, Alban Gaignard, Patrick Hugonnard, Carole Lartizien, Hervé Liebgott, Johan Montagnat, Joachim Tabary, Tristan Glatard.
      https://www.hal.inserm.fr/inserm-01062371
    • [25] Global Initiative for Sentinel e-Health Network on Grid (GINSENG), Medical data integration and semantic developments for epidemiology
      S Cipiere, G. Ereteo, Alban Gaignard, Boujelben N., S. Gaspard, Vincent Breton, F. Cervenansky, David R.C. Hill, T. Glatard, D. Manset, J. Montagnat, L. Revillard J. And Maigne.
      https://hal.uca.fr/hal-02083188
    • [26] Publication, partage et réutilisation de règles sur le Web de données
      Oumy Seye, Catherine Faron Zucker, Olivier Corby, Alban Gaignard.
      https://hal.inria.fr/hal-01015281
    • [28] A virtual imaging platform for multi-modality medical image simulation.
      Tristan Glatard, Carole Lartizien, Bernard Gibaud, Rafael Ferreira da Silva, Germain Forestier, Frederic Cervenansky, Martino Alessandrini, Hugues Benoit-Cattin, Olivier Bernard, Sorina Camarasu-Pop, Nadia Cerezo, Patrick Clarysse, Alban Gaignard, Patrick Hugonnard, Hervé Liebgott, Simon Marache-Francisco, Adrien Marion, Johan Montagnat, Joachim Tabary, Denis Friboulet.
      https://www.hal.inserm.fr/inserm-00762497
    • [34] NeuroLOG: sharing neuroimaging data using an ontology-based federated approach.
      Bernard Gibaud, Gilles Kassel, Michel Dojat, Bénédicte Batrancourt, Franck Michel, Alban Gaignard, Johan Montagnat.
      https://hal.archives-ouvertes.fr/hal-00683087
    • [35] A federated system for sharing and reuse of images and image processing tools in neuroimaging
      Bernard Gibaud, Farooq Ahmad, Christian Barillot, Franck Michel, Bacem Wali, Bénédicte Batrancourt, Michel Dojat, Pascal Girard, Alban Gaignard, Diane Lingrand, Johan Montagnat, Javier Rojas Balderrama, Grégoire Malandain, Xavier Pennec, David Godard, Gilles Kassel, Mélanie Pélégrini-Issac.
      https://hal.archives-ouvertes.fr/hal-00690921
    • [36] NeuroLOG: A framework for the sharing and reuse of distributed tools and data in neuroimaging
      Michel Dojat, Mélanie Pélégrini-Issac, Farooq Ahmad, Christian Barillot, Bénédicte Batrancourt, Alban Gaignard, Bernard Gibaud, Pascal Girard, David Godard, Gilles Kassel, Diane Lingrand, Grégoire Malandain, Franck Michel, Johan Montagnat, Xavier Pennec, Javier Balderrama, Bacem Wali.
      https://hal.inria.fr/hal-00813796

      2010

    • [37] Grid-wide neuroimaging data federation in the context of the NeuroLOG project.
      Franck Michel, Alban Gaignard, Farooq Ahmad, Christian Barillot, Bénédicte Batrancourt, Michel Dojat, Bernard Gibaud, Pascal Girard, David Godard, Gilles Kassel, Diane Lingrand, Grégoire Malandain, Johan Montagnat, Mélanie Pélégrini-Issac, Xavier Pennec, Javier Rojas Balderrama, Bacem Wali.
      https://www.hal.inserm.fr/inserm-00512799
    • [42] Managing Variability Complexity in Aspect-Oriented Modeling
      Brice Morin, Gilles Vanwormhoudt, Philippe Lahire, Alban Gaignard, Olivier Barais, Jean-Marc Jézéquel.
      https://hal.inria.fr/inria-00457129

      2007

    • [43] Introducing variability into Aspect-Oriented Modeling approaches
      Philippe Lahire, Brice Morin, Gilles Vanwormhoudt, Alban Gaignard, Olivier Barais, Jean-Marc Jézéquel.
      https://hal.inria.fr/inria-00477562

      2006

    • [44] Sharing data and image processing tools in neuroimaging.
      Bernard Gibaud, Christian Barillot, Habib Benali, Michel Dojat, Alban Gaignard, Serge Kinkingnéhun, Jean-Pierre Matsumoto, Mélanie Pélégrini-Issac, Eric Simon, Lynda Temal.
      https://www.hal.inserm.fr/inserm-00152138
    • [45] Federating distributed and heterogeneous information sources in neuroimaging: the NeuroBase Project.
      Christian Barillot, Habib Benali, Michel Dojat, Alban Gaignard, Bernard Gibaud, Serge Kinkingnéhun, Jean-Pierre Matsumoto, Mélanie Pélégrini-Issac, Eric Simon, Lynda Temal.
      https://www.hal.inserm.fr/inserm-00141685
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Groupement de Recherche en Intégration de données Omics à Très grande Echelle