Publications HAL des membres

Jérémie Bourdon

      2019

    • [2] The limit of cell specification concept: a lesson from scRNA-Seq on early human development
      Dimitri Meistermann, Sophie Loubersac, Arnaud Reignier, Valentin François-Campion, Thomas Fréour, Jérémie Bourdon, Laurent David.
      https://www.hal.inserm.fr/inserm-02164425
    • [4] Probabilistic Modeling of Microbial Metabolic Networks for Integrating Partial Quantitative Knowledge Within the Nitrogen Cycle
      Damien Eveillard, Nicholas Bouskill, Damien Vintache, Julien Gras, Bess Ward, Jérémie Bourdon.
      https://hal.archives-ouvertes.fr/hal-01996045
    • [7] Parallel derivation of isogenic human primed and naive induced pluripotent stem cells
      Stéphanie Kilens, Dimitri Meistermann, Diego Moreno, Caroline Chariau, Anne Gaignerie, Arnaud Reignier, Yohann Lelièvre, Miguel Casanova, Céline Vallot, Steven Nedellec, Léa Flippe, Julie Firmin, Juan Song, Eric Charpentier, Jenna Lammers, Audrey Donnart, Nadège Marec, Wallid Deb, Audrey Bihouée, Cédric Le Caignec, Claire Pecqueur, Richard Redon, Paul Barriere, Jérémie Bourdon, Vincent Pasque, Magali Soumillon, Tarjei Mikkelsen, Claire Rougeulle, Thomas Freour, Laurent David, Milieu Intérieur Consortium.
      https://hal-pasteur.archives-ouvertes.fr/pasteur-01758726
    • [8] Parallel derivation of isogenic human primed and naive induced pluripotent stem cells
      The Milieu Intérieur Consortium, Stephanie Kilens, Dimitri Meistermann, Diego Moreno, Caroline Chariau, Anne Gaignerie, Arnaud Reignier, Yohann Lelièvre, Miguel Casanova, Céline Vallot, Steven Nedellec, Léa Flippe, Julie Firmin, Juan Song, Eric Charpentier, Jenna Lammers, Audrey Donnart, Nadège Marec, Wallid Deb, Audrey Bihouee, Cédric Le Caignec, Claire Pecqueur, Richard Redon, Paul Barriere, Jérémie Bourdon, Vincent Pasque, Magali Soumillon, Tarjei S Mikkelsen, Claire Rougeulle, Thomas Freour, Laurent David.
      https://www.hal.inserm.fr/hal-01881146
    • [9] Computational Discovery of Dynamic Cell Line Specific Boolean Networks from Multiplex Time-Course Data
      Misbah Razzaq, Loïc Paulevé, Anne Siegel, Julio Saez-Rodriguez, Jérémie Bourdon, Carito Guziolowski.
      https://hal.archives-ouvertes.fr/hal-01897020
    • [13] Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks
      Sylvain Prigent, Clémence Frioux, Simon M Dittami, Sven Thiele, Abdelhalim Larhlimi, Guillaume Collet, Gutknecht Fabien, Jeanne Got, Damien Eveillard, Jérémie Bourdon, Frédéric Plewniak, Thierry Tonon, Anne Siegel.
      https://hal.inria.fr/hal-01449100
    • [14] Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks
      Sylvain Prigent, Clémence Frioux, Simon Dittami, Sven Thiele, Abdelhalim Larhlimi, Guillaume Collet, Fabien Gutknecht, Jeanne Got, Damien Eveillard, Jérémie Bourdon, Frédéric Plewniak, Thierry Tonon, Anne Siegel.
      https://hal.inrae.fr/hal-02937671
    • [17] Model of the delayed translation of cyclin B maternal mRNA after sea urchin fertilization
      Vincent Picard, Odile Mulner-Lorillon, Jérémie Bourdon, Julia Morales, Patrick Cormier, Anne Siegel, Robert Bellé.
      https://hal.sorbonne-universite.fr/hal-01390047
    • [21] A Logic for Checking the Probabilistic Steady-State Properties of Reaction Networks
      Vincent Picard, Anne Siegel, Jérémie Bourdon.
      https://hal.inria.fr/hal-01196598
    • [22] Multivariate Normal Approximation for the Stochastic Simulation Algorithm: Limit Theorem and Applications
      Vincent Picard, Anne Siegel, Jérémie Bourdon.
      https://hal.inria.fr/hal-01196533

      2014

    • [24] Multivariate Normal Approximation for the Stochastic Simulation Algorithm: limit theorem and applications
      Vincent Picard, Anne Siegel, Jérémie Bourdon.
      https://hal.inria.fr/hal-01079768
    • [25] Exploring metabolism flexibility in complex organisms through quantitative study of precursor sets for system outputs
      Oumarou Abdou-Arbi, Sophie Lemosquet, Jaap Van Milgen, Anne Siegel, Jérémie Bourdon.
      https://hal.inria.fr/hal-00947219
    • [26] Modelization of the regulation of protein synthesis following fertilization in sea urchin shows requirement of two processes: a destabilization of eIF4E:4E-BP complex and a great stimulation of the 4E-BP-degradation mechanism, both rapamycin-sensitive
      Sébastien Laurent, Adrien Richard, Odile Mulner-Lorillon, Julia Morales, Didier Flament, Virginie Glippa, Jérémie Bourdon, Pauline Gosselin, Anne Siegel, Patrick Cormier, Robert Bellé.
      https://hal.inria.fr/hal-01079758
    • [32] Systems biology approaches at cellular level in the model organism Ectocarpus siliculosus to better understand brown algal physiology
      Thierry Tonon, Patricia Bonin, Sylvain Prigent, Z. Shao, Agnès Groisillier, Sylvie Rousvoal, Sophie Goulitquer, Jérémie Bourdon, Damien Eveillard, Catherine Boyen, Anne Siegel.
      https://hal.inria.fr/hal-00760640

      2011

    • [34] Toward systems biology in brown algae to explore acclimation and adaptation to the shore environment.
      Thierry Tonon, Damien Eveillard, Sylvain Prigent, Jérémie Bourdon, Philippe Potin, Catherine Boyen, Anne Siegel.
      https://hal.archives-ouvertes.fr/hal-00661751
    • [35] Toward Systems Biology in Brown Algae to Explore Acclimation and Adaptation to the Shore Environment
      Thierry Tonon, Damien Eveillard, Sylvain Prigent, Jérémie Bourdon, Philippe Potin, Catherine Boyen, Anne Siegel.
      https://hal.inrae.fr/hal-02937721
    • [42] A generic stoichiometric model to analyse the metabolic flexibility of the mammary gland in lactating dairy cows
      Sophie Lemosquet, Oumarou Abdou-Arbi, Anne Siegel, Jocelyne Guinard-Flament, Jaap van Milgen, Jérémie Bourdon.
      https://hal.inria.fr/inria-00538138

      2009

    • [43] La calculette métabolique": une approche de modélisation biochimique pour explorer les contraintes au sein du métabolisme des mammifères
      Oumarou Abdu Arbi, Jérémie Bourdon, Anne Siegel, Jacob van Milgen, Sophie Lemosquet.
      https://hal.inrae.fr/hal-02758027
    • [44] A Generic Stochiometric Model to Analyse the Metabolic Flexibility of the Mammary Gland in Lactating Dairy Cows
      Sophie Lemosquet, Jérémie Bourdon, Jocelyne Guinard-Flament, Anne Siegel, Jaap van Milgen.
      https://hal.archives-ouvertes.fr/hal-00416396
    • [46] Temporal constraints of a gene regulatory network: Refining a qualitative simulation.
      Jamil Ahmad, Jérémie Bourdon, Damien Eveillard, Jonathan Fromentin, Olivier Roux, Christine Sinoquet.
      https://hal.archives-ouvertes.fr/hal-00415921
    • [47] Temporal constraints of a gene regulatory network: refining a qualitative simulation
      Jamil Ahmad, Jérémie Bourdon, Damien Eveillard, Jonathan Fromentin, Olivier Roux, Christine Sinoquet.
      https://hal.archives-ouvertes.fr/hal-00423353
    • [48] Qualitative modelling and analysis of gene regulatory networks: application to the adaptation of Escherichia coli bacterium to carbon availability
      Jamil Ahmad, Jérémie Bourdon, Damien Eveillard, Jonathan Fromentin, Olivier Roux, Christine Sinoquet.
      https://hal.archives-ouvertes.fr/hal-00359530
    • [52] Combinations of cytochrome P450 gene polymorphisms enhancing the risk for sporadic colorectal cancer related to red meat consumption.
      Sébastien Küry, Bruno Buecher, Sébastien Robiou-Du-Pont, Catherine Scoul, Véronique Sébille, Hélène Colman, Claire Le Houérou, Tanguy Le Neel, Jérémie Bourdon, Roger Faroux, Jean Ollivry, Bernard Lafraise, Louis-Dominique Chupin, Stéphane Bézieau.
      https://hal.archives-ouvertes.fr/hal-00415938
    • [55] Distribution des solutions du problème d'affectation multi-objectif et relation avec l'efficacité des algorithmes de résolution
      Anthony Przybylski, Jérémie Bourdon, Xavier Gandibleux.
      https://hal.archives-ouvertes.fr/hal-00465766
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Groupement de Recherche en Intégration de données Omics à Très grande Echelle