Publications HAL des membres

Matthieu Barret

      2020

    • [1] Insect pollination: an ecological process involved in the assembly of the seed microbiota
      Alberto Prado Farias, Brice Marolleau, Bernard Vaissière, Matthieu Barret, Gloria Torres-Cortés.
      https://hal.inrae.fr/hal-02623164
    • [2] Biocontrôle
      Xavier Fauvergue, Adrien Rusch, Matthieu Barret, Marc Bardin, Emmanuelle Jacquin-Joly, Thibaut Malausa, Christian Lannou.
      https://hal.inrae.fr/hal-02791036
    • [3] Impact of a resistance gene against a fungal pathogen on the plant host residue microbiome: the case of the Leptosphaeria maculans-Brassica napus pathosystem
      Lydie Kerdraon, Matthieu Barret, Marie-Hélène Balesdent, Frédéric Suffert, Valerie Laval.
      https://hal.inrae.fr/hal-02790936
    • [5] Differences in resource use lead to coexistence of seed-transmitted microbial populations
      Gloria Torres-Cortés, B. J. Garcia, Stéphane Compant, Samir Rezki, P Jones, Anne Préveaux, Martial Briand, A Roulet, Olivier Bouchez, D Jacobson, Matthieu Barret.
      https://hal.univ-angers.fr/hal-02557440
    • [6] Crop Residues in Wheat-Oilseed Rape Rotation System: a Pivotal, Shifting Platform for Microbial Meetings
      Lydie Kerdraon, Marie-Helene Balesdent, Matthieu Barret, Valerie Laval, Frederic Suffert.
      https://hal.inrae.fr/hal-02620072
    • [7] Influence of environment and host plant genotype on the structure and diversity of the Brassica napus seed microbiota
      Aude Rochefort, Martial Briand, Coralie Marais, Marie-Hélène Wagner, Anne Laperche, Patrick Vallée, Matthieu Barret, Alain Sarniguet.
      https://hal-agrocampus-ouest.archives-ouvertes.fr/hal-02275205
    • [8] Insect pollination is an ecological process involved in the assembly of the seed microbiota
      Alberto Prado Farias, Brice Marolleau, Bernard Vaissière, Matthieu Barret, Gloria Torres Cortes.
      https://hal.inrae.fr/hal-02624711
    • [9] Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat
      Lydie Kerdraon, Matthieu Barret, Valerie Laval, Frederic Suffert.
      https://hal.inrae.fr/hal-02622442
    • [10] Combined approaches to identify the incidence of Zymoseptoria tritici on microbial community in the wheat residues ecosystem.
      Lydie Kerdraon, Marie-Helene Balesdent, Matthieu Barret, Frederic Suffert, Valerie Laval.
      https://hal.inrae.fr/hal-02736233
    • [11] Maternal effects shape seed mycobiota in a foundation tree species (Quercus petraea)
      Tania Fort, Corinne Vacher, Charlie Pauvert, Amy Zanne, Otso Ovaskainen, Thomas Caignard, Matthieu Barret, Stéphane Compant, Arndt Hampe, Sylvain Delzon.
      https://hal.archives-ouvertes.fr/hal-02154443
    • [12] Maternal effects and environmental filtering shape seed fungal communities in oak trees
      Tania Fort, Charlie Pauvert, Amy E. Zanne, Otso Ovaskainen, Thomas Caignard, Matthieu Barret, Stéphane Compant, Arndt Hampe, Sylvain Delzon, Corinne Vacher.
      https://hal.inrae.fr/hal-02624819
    • [13] Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat;
      Lydie Kerdraon, Matthieu Barret, Valerie Laval, Frédéric Suffert.
      https://hal.inrae.fr/hal-02624822
    • [14] A rapid and simple method for assessing and representing genome sequences relatedness
      Martial Briand, Mariam Bouzid, Gilles Hunault, Marc Legeay, Marion Le Saux, Matthieu Barret.
      https://hal.archives-ouvertes.fr/hal-02171444
    • [15] rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing
      Jean-Claude Ogier, Sylvie Pages, Maxime Galan, Matthieu Barret, Sophie Gaudriault.
      https://hal.inrae.fr/hal-02627663

      2018

    • [16] Seed mycobiota is influenced by maternal and environmental effects in sessile oak
      Tania Fort, Charlie Pauvert, Thomas Caignard, Matthieu Barret, Stéphane Compant, Arndt Hampe, Sylvain Delzon, Amy Zanne, Corinne Vacher.
      https://hal.inrae.fr/hal-02734943
    • [17] In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana
      Claudia Bartoli, Léa Frachon, Matthieu Barret, Mylène Rigal, Carine Huard-Chauveau, Baptiste Mayjonade, Catherine Zanchetta, Olivier Bouchez, Dominique Roby, Sebastien Carrere, Fabrice Roux.
      https://hal.archives-ouvertes.fr/hal-02373577
    • [18] Role of agronomic and bread-making practices in sourdough microbial diversity and bread nutritional and organoleptic properties
      Elisa Michel, Stephane Guezenec, Judith Legrand, Isabelle Goldringer, Simon Rousselot, Véronique Chable, Estelle Serpolay-Besson, Matthieu Barret, Marie-Noelle Madec, Florence Valence-Bertel, Philippe Roussel, Serge Casaregola, Laurent Marteau, Florent Mercier, Gilles Simmoneaux, Michel Perrin, Xavier Dell'Armi, Emilien Brochet, Hélène Simon-Chaudy, Lili Moyses, Xavier Dousset, Bernard Onno, Delphine Sicard.
      https://hal.archives-ouvertes.fr/hal-02154390
    • [19] Interactions plantes/micro-organismes dans la rhizosphère
      Philippe Lemanceau, Matthieu Barret, Manuel Blouin, Sylvie Mazurier, Barbara Pivato.
      https://hal.inrae.fr/hal-02786073
    • [20] Complete genomic sequence of Raphanus sativus cryptic virus 4 (RsCV4), a novel alphapartitivirus from radish
      Laurence Svanella-Dumas, Sébastien Theil, Matthieu Barret, Thierry Candresse.
      https://hal.univ-angers.fr/hal-02516679
    • [21] Editorial special issue: the soil, the seed, the microbes and the plant
      Eric Nelson, Philippe Simoneau, Matthieu Barret, Birgit Mitter, Stéphane Compant.
      https://hal.univ-angers.fr/hal-02516579
    • [22] Assembly of seed-associated microbial communities within and across successive plant generations
      Samir Rezki, Claire Campion, Philippe Simoneau, Marie-Agnès Jacques, Ashley Shade, Matthieu Barret.
      https://hal.univ-angers.fr/hal-02516590
    • [23] Niches and routes of transmission of Xanthomonas citri pv. fuscans to bean seeds
      Armelle Darrasse, Matthieu Barret, Sophie Cesbron, Stéphane Compant, Marie-Agnès Jacques.
      https://hal.univ-angers.fr/hal-02516672
    • [24] Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence
      Gloria Torres-Cortés, Sophie Bonneau, Olivier Bouchez, Clémence Genthon, Martial Briand, Marie-Agnès Jacques, Matthieu Barret.
      https://hal.univ-angers.fr/hal-02516666
    • [25] Commentary: seed bacterial inhabitants and their routes of colonization
      Carolina Escobar Rodríguez, Birgit Mitter, Matthieu Barret, Angela Sessitsch, Stéphane Compant.
      https://hal.univ-angers.fr/hal-02516685
    • [26] Plant/micro-organism interactions in the rhizosphere
      Philippe Lemanceau, Matthieu Barret, Manuel Blouin, Sylvie Mazurier, Barbara Pivato.
      https://hal.inrae.fr/hal-02786890
    • [27] Genome sequence of the necrotrophic plant pathogen Alternaria brassicicola Abra43
      Elodie Belmas, Martial Briand, Anthony Kwasiborski, Justine Colou, Guillaume Nguyen, B. Iacomi, Philippe Grappin, Claire Campion, Philippe Simoneau, Matthieu Barret, Thomas Guillemette.
      https://hal.univ-angers.fr/hal-02516580

      2017

    • [28] Metagenomic analysis shows a shift in taxonomic and functional composition of the gut microbiota in NASH patients
      Jérôme Boursier, Matthieu Barret, Julien Macé, Gilles Hunnault, Cynthia D. Guy, Lionel Fizanne, Adrien Lannes, Oberti Frederic, Isabelle Fouchard-Hubert, Paul Calès, Anna Mae Diehl.
      https://hal.inrae.fr/hal-02738173
    • [29] Potential of the rpoB gene for metabarcoding of bacterial communities associated with entomopathogenic nematodes Steinernema
      Jean-Claude Ogier, Sylvie Pages, Matthieu Barret, Sophie Gaudriault.
      https://hal.archives-ouvertes.fr/hal-01837311
    • [33] Pathobiome entomopathogenic nematodes Development of methodology for a taxonomic assignation at the species level in the the pathobiome of entomopathogenic nematodes from the Steinernema genus
      Jean-Claude Ogier, Sophie Gaudriault, Pauline Heuillard, Olivier Zemb, Sebastien Carrere, Maxime Galan, Matthieu Barret.
      https://hal.archives-ouvertes.fr/hal-01603194
    • [34] Microbial metacommunity: a METABAR coding approach
      Marc Buee, Matthieu Barret, Maria Bernard, Didier Debroas, Isabelle Domaizon, Laure Fauchery, Claude Husson, Valerie Laval, Géraldine Pascal, Charlie Pauvert, Christophe Mougel, Thomas Pommier, Dirk Redecker, Aymé Spor, Sébastien Terrat, Veronique Edel-Hermann, Corinne Vacher.
      https://hal.archives-ouvertes.fr/hal-01607836
    • [35] Plant communication with associated microbiota in the spermosphere, rhizosphere and phyllosphere
      Philippe Lemanceau, Matthieu Barret, Sylvie Mazurier, Samuel Mondy, Barbara Pivato, Thomas Fort, Corinne Vacher.
      https://hal.archives-ouvertes.fr/hal-01608302
    • [37] Bacterial and fungal communities vary with the type of organic substrate: implications for biocontrol of soilless crops
      Virginie Montagne, Hervé Capiaux, Matthieu Barret, Patrice Cannavo, Sylvain Charpentier, Claire Grosbellet, Thierry Lebeau.
      https://hal.archives-ouvertes.fr/hal-01524498
    • [38] Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens
      Déborah Merda, Martial Briand, Eran Bosis, Céline Rousseau, Perrine Portier, Matthieu Barret, Marie-Agnès Jacques, Marion Fischer-Le Saux.
      https://hal.archives-ouvertes.fr/hal-01904571

      2016

    • [39] Microbiome diversity in crop debris and the search for micro-organisms acting on Zymoseptoria tritici and Leptosphaeria maculans primary inoculum
      Lydie Kerdraon, Marie-Helene Balesdent, Matthieu Barret, Valerie Laval, Frederic Suffert.
      https://hal.archives-ouvertes.fr/hal-01456000
    • [41] The severity of nonalcoholic fatty liver disease is associated with gut dysbiosis and shift in the metabolic function of the gut microbiota
      Matthieu Barret, Mariana Machado, Lionel Fizanne, Felix Araujo-Perez, Cynthia Guy, Patrick Seed, John Rawls, Lawrence David, Gilles Hunault, Frédéric Oberti, Paul Calès, Anna Mae Diehl, Jérôme Boursier, Olaf Mueller.
      https://hal.univ-angers.fr/hal-02516681
    • [42] Answer to Ling et al “Predictive roles of gut dysbiosis on the severity of NAFLD”
      Jérôme Boursier, Matthieu Barret, Anna Mae Diehl.
      https://hal.inrae.fr/hal-02632028
    • [43] Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms
      Samir Rezki, Claire Campion, Béatrice Iacomi-Vasilescu, Anne Préveaux, Youness Toualbia, Sophie Bonneau, Martial Briand, Emmanuelle Laurent, Gilles Hunault, Philippe Simoneau, Marie-Agnès Jacques, Matthieu Barret.
      https://hal.archives-ouvertes.fr/hal-01392639
    • [44] Characterization of relative abundance of lactic acid bacteria species in French organic sourdough by cultural, qPCR and MiSeq high-throughput sequencing methods
      Elisa Michel, Clarisse Monfort, Marion Deffrasnes, Stéphane Guezenec, Emilie Lhomme, Matthieu Barret, Delphine Sicard, Xavier Dousset, Bernard Onno.
      https://hal.archives-ouvertes.fr/hal-01527569
    • [45] Terroir is a key driver of seed-associated microbial assemblages
      Stéphanie Klaedtke, Marie Agnes Jacques, Lorenzo Raggi, Anne Preveaux, Sophie Bonneau, Valeria Negri, Véronique Chable, Matthieu Barret.
      https://hal.archives-ouvertes.fr/hal-01455975

      2015

    • [46] Increasing severity of NAFLD is associated with gut dysbiosis and modification of the metabolic function of the gut microbiota
      Jérôme Boursier, Olaf Mueller, Matthieu Barret, Mariana V. Machado, Lionel Fizanne, Cynthia D. Guy, John F. Rawls, Lawrence David, Gilles Hunault, Frédéric Oberti, Paul Calès, Anna Mae Diehl.
      https://hal.inrae.fr/hal-02743129
    • [48] Dynamique de la structure du microbiote des semences lors de la germination-levée
      Matthieu Barret, Martial Briand, Sophie Bonneau, Anne Préveaux, Sophie Valière, Olivier Bouchez, Philippe Simoneau, Marie-Agnès Jacques.
      https://hal.univ-angers.fr/hal-02516450
    • [49] Structure and function of the seed microbiota
      Claire Campion, Philippe Simoneau, Marie-Agnès Jacques, Matthieu Barret, Stephanie Klaedtke, Samir Rezki, Martial Briand, Sophie Bonneau, Anne Préveaux.
      https://hal.univ-angers.fr/hal-02516443
    • [50] Pairwise transcriptomic analysis of the interactions between the ectomycorrhizal fungus laccaria bicolor S238N and three beneficial, neutral and antagonistic soil bacteria
      Aurélie Deveau, Matthieu Barret, Abdala Gamby Diedhiou, Johan Leveau, Wietse de Boer, Francis Martin, Alain Sarniguet, Pascale Frey-Klett.
      https://hal.archives-ouvertes.fr/hal-01208788
    • [51] Emergence Shapes the Structure of the Seed Microbiota
      Matthieu Barret, Martial Briand, Sophie Bonneau, Anne Préveaux, Sophie Valière, Olivier Bouchez, Gilles Hunault, Philippe Simoneau, Marie-Agnès Jacques.
      https://hal.archives-ouvertes.fr/hal-01153480

      2014

    • [52] Microbial communities associated to common bean seed - A mechanism of local adaptation of plants?
      Stéphanie Klaedtke, Matthieu Barret, Véronique Chable, Marie Agnes Jacques.
      https://hal.archives-ouvertes.fr/hal-01455977
    • [54] Identification of novel phytase genes from an agricultural soil-derived metagenome.
      Hao Tan, Marlies J Mooij, Matthieu Barret, Pardraig M Hegarty, Catriona Harington, Alan D W Dobson, Fergal O'Gara.
      https://hal.inrae.fr/hal-02639216

      2013

    • [55] Molecular evolution of LysR-type transcriptional regulation in Pseudomonas aeruginosa
      F. Jerry Reen, Matthieu Barret, Emilie Fargier, Marcus O’muinneacháin, Fergal O’gara.
      https://hal.inrae.fr/hal-02649223
    • [56] Long-term phosphorus fertilisation increased the diversity of the total bacterial community and the phoD phosphorus mineraliser group in pasture soils
      Hao Tan, Matthieu Barret, Marlies J. Mooij, Olivia Rice, John P. Morrissey, Alan Dobson, Bryan Griffiths, Fergal O’gara.
      https://hal.inrae.fr/hal-02653047
    • [57] Genomic analysis of the biocontrol strain Pseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots
      Muriel Marchi, Morgane Boutin, Kevin Gazengel, Claude Rispe, Jean-Pierre Gauthier, Anne-Yvonne Guillerm-Erckelboudt, Lionel Lebreton, Matthieu Barret, Stéphanie Daval, Alain Sarniguet.
      https://hal.archives-ouvertes.fr/hal-01208629
    • [58] Subtilomycin: A New Lantibiotic from Bacillus subtilis Strain MMA7 Isolated from the Marine Sponge Haliclona simulans
      Robert Phelan, Matthieu Barret, Paul Cotter, Paula O'Connor, Rui Chen, John Morrissey, Alan Dobson, Fergal O'Gara, Teresa Barbosa.
      https://hal.inrae.fr/hal-02651130
    • [59] Characterization of the SPI-1 and Rsp type three secretion systems inPseudomonas fluorescens F113
      Matthieu Barret, Frank Egan, Jennifer Moynihan, John P. Morrissey, Olivier Lesouhaitier, Fergal O'Gara.
      https://hal.inrae.fr/hal-02644403
    • [60] Distribution and diversity of bacterial secretion systems across metagenomic datasets.
      Matthieu Barret, Frank Egan, Fergal O'Gara.
      https://hal.inrae.fr/hal-02653049
    • [61] Combined effects of wheat roots and pathogenic fungus Gaeumannomyces graminis var tritici on Gene Expression of the biocontrol bacterium Pseudomonas fluorescens Pf29Arp
      Matthieu Barret, Pascale Frey-Klett, Anne-Yvonne Guillerm-Erckelboudt, Morgane Boutin, Grégory Guernec, Muriel Marchi, Stéphanie Daval, Alain Sarniguet.
      https://hal.inrae.fr/hal-02803298
    • [62] Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction
      Miguel Redondo-Nieto, Matthieu Barret, John Morrissey, Kieran Germaine, Francisco Martínez-Granero, Emma Barahona, Ana Navazo, María Sánchez-Contreras, Jennifer A Moynihan, Candela Muriel, David Dowling, Fergal O’gara, Marta Martin, Rafael Rivilla.
      https://hal.inrae.fr/hal-02650368

      2012

    • [63] Genome Sequence of the Biocontrol Strain Pseudomonas fluorescens F113
      M. Redondo-Nieto, Matthieu Barret, J. P. Morrisey, K. Germaine, F. Martinez-Granero, E. Barahona, A. Navazo, M. Sanchez-Contreras, J. A. Moynihan, S. R. Giddens, E. R. Coppoolse, C. Muriel, W. J. Stiekema, P. B. Rainey, D. Dowling, F. O'Gara, M. Martin, R. Rivilla.
      https://hal.inrae.fr/hal-02652031

      2011

    • [64] Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered
      Matthieu Barret, F. Egan, E. Fargier, J. P. Morrissey, F. O'Gara.
      https://hal.inrae.fr/hal-02650365
    • [65] Bacterial-fungal Interactions: hyphens between agricultural, clinical, environmental, and food microbiologists
      Pascale Frey-Klett, Peter Burlinson, Aurélie Deveau, Matthieu Barret, M. Tarkka, Alain Sarniguet.
      https://hal.inrae.fr/hal-02651157
    • [66] Functional genomics analysis of plant growth-promoting rhizobacterial traits involved in rhizosphere competence
      Matthieu Barret, John P. Morrissey, Fergal O’gara.
      https://hal.inrae.fr/hal-02650050

      2010

    • [67] Computational prediction of the Crc regulon identifies genus-wide and species-specific targets of catabolite repression control in Pseudomonas bacteria
      Thomas Browne, Matthieu Barret, Fergal O'Gara, John P Morrissey.
      https://hal.inrae.fr/hal-02656830

      2009

    • [68] Effect of wheat roots infected with the pathogenic fungus gaeumannomyces graminis var. tritici on gene expression of the biocontrol bacterium pseudomonas fluorescens Pf29Arp
      Matthieu Barret, Pascale Frey-Klett, Anne-Yvonne Guillerm-Erckelboudt, Morgane Boutin, Grégory Guernec, Alain Sarniguet.
      https://hal.inrae.fr/hal-02663862
    • [69] Analyse différentielle du transcriptome de la rhizobactérie Pseudomonas fluorescens Pf29Arp lors d'intercations avec le champignon pathogène du blé Gaeumannomyces graminis var. tritici
      Matthieu Barret.
      https://hal.inrae.fr/tel-02818996
    • [70] The plant pathogenic fungus Gaeumannomyces graminis var. tritici improves bacterial growth and triggers early gene regulations in the biocontrol strain Pseudomonas fluorescens Pf29Arp
      Matthieu Barret, P. Frey-Klett, M. Boutin, A.-Y. Guillerm-Erckelboudt, Frédérique Martin, Laëtitia Guillot, Alain Sarniguet.
      https://hal.inria.fr/inria-00359115

      2008

    • [71] Bactéries et champignons interagissent pour la santé des plantes
      Alain Sarniguet, Matthieu Barret, Lionel Lebreton, Stéphanie Daval.
      https://hal.inrae.fr/hal-02664697
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Groupement de Recherche en Intégration de données Omics à Très grande Echelle